PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048520
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 167aa    MW: 18585.7 Da    PI: 8.4252
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048520genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.56.6e-08129157131
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krf 31 
                           s+y+GV++++++grW+++I+ ++       k+f
  PGSC0003DMP400048520 129 SQYRGVTFYRRTGRWESHIWSVY----FlqKKF 157
                           78*****************9942....123555 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
METVTASGKL KELSFGQIEN SGTSNSSIVN VETSSTAGDD EFISCSDQRT DGYAFEILRA  60
DYEGNGFVTK ELFPLTGGES AAPPSQQQQW LDLSGNYSDV PMEQRIVLGP PQLRQQVKKS  120
RRGPRSRSSQ YRGVTFYRRT GRWESHIWSV YFLQKKFPIT VVFGLG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400570.0AC240057.1 Solanum tuberosum cultivar RH89-039-16 chromosome 9 clone RH186C17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086406.16e-89PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
RefseqXP_015086400.16e-89PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
RefseqXP_015086405.19e-89PREDICTED: floral homeotic protein APETALA 2-like isoform X1
RefseqXP_015086399.19e-89PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotQ9LVG24e-25TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLM1CP771e-120M1CP77_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000717321e-102(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.26e-19target of early activation tagged (EAT) 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]